machine_learn/tree/my_tree.py

#!/usr/bin/python
# -*- coding: UTF-8 -*-
from sklearn.datasets import load_wine,load_breast_cancer
from sklearn.model_selection import train_test_split
import numpy as np

feature_name = ['酒精', '苹果酸', '灰', '灰的碱性', '镁', '总酚', '类黄酮',
                '非黄烷类酚类', '花青素', '颜色强度', '色调', 'od280/od315稀释葡萄酒', '脯氨酸'
                , 'A', 'B', 'c', 'D','E','F','G','H','I','J','K','L','M','N','O','P','Q','R','S','T']
class_names=["琴酒", "雪莉", "贝尔摩德"]

# 生成决策树的节点类型
class TreeNode(object):
    idx = 0                  # 属性
    idx_value = 0.0          # 属性值
    ent = 0.0                # 信息增益
    is_leaf = False
    y = 0                   # 预测值
    samples = 0             # 样本数
    value = []              # 分布情况
    left = None
    right = None

    def __init__(self, idx, idx_value, ent, is_leaf, y, samples, value, left=None, right=None):
        self.idx = idx
        self.idx_value = idx_value
        self.is_leaf = is_leaf
        self.ent = ent
        self.y = y
        self.samples = samples
        self.value = value
        self.left = left
        self.right = right

        if self.y is None:
            self.y = np.where(value == np.max(value))[0][0] ## TODO
            # print(self.y, self.value)

    def __str__(self):
        if self.idx == -1:
            return "%s,%f, ent:%f, leaf:%d, samples:%d, value:%s, %s" % \
               ('', self.idx_value, self.ent, self.is_leaf,self.samples, self.value, class_names[self.y])
        else:
            return "%s,%f, ent:%f, leaf:%d, samples:%d, value:%s, %s" % \
                   (feature_name[self.idx], self.idx_value, self.ent, self.is_leaf, self.samples, self.value, class_names[self.y])

    def export(self, _feature_name, _class_names):
        if self.idx == -1:
            return "%s,%f, ent:%f, leaf:%d, samples:%d, value:%s, %s" % \
               ('', self.idx_value, self.ent, self.is_leaf,self.samples, self.value, _class_names[self.y])
        else:
            return "%s,%f, ent:%f, leaf:%d, samples:%d, value:%s, %s" % \
                   (_feature_name[self.idx], self.idx_value, self.ent, self.is_leaf, self.samples, self.value, _class_names[self.y])


def read_data():
    wine = load_wine()
    print("数组结构", wine.data.shape)  # 178*13
    print(wine.target)
    print(wine.feature_names)
    print(wine.target_names)
    # 如果wine是一张表，应该长这样：
    import pandas as pd
    # pdata = pd.concat([pd.DataFrame(wine.data), pd.DataFrame(wine.target)], axis=1)
    Xtrain, Xtest, Ytrain, Ytest = train_test_split(wine.data,wine.target,test_size=0.3)
    return Xtrain, Xtest, Ytrain, Ytest


def calc_ent(x, weights=None):
    """
        calculate shanno ent of x
    """
    x_value_list = set([x[i] for i in range(x.shape[0])])
    ent = 0.0

    if weights is not None:
        weights = weights / sum(weights)

    for x_value in x_value_list:
        if weights is None:
            p = float(x[x == x_value].shape[0]) / x.shape[0]
        else:
            p = sum(sum([x == x_value]*weights))
        logp = np.log2(p)
        ent -= p * logp

    return ent


def cal_gini(x):
    x_value_list = set([x[i] for i in range(x.shape[0])])
    ent = 0.0
    for x_value in x_value_list:
        p = float(x[x == x_value].shape[0]) / x.shape[0]
        ent += p*p
    return 1-ent


def calc_ent1(x):
    """
        calculate shanno ent of x
    """
    p_set = []
    for item in x:
        for i in p_set:
            if i[0] == item:
                i[1] = i[1] + 1
                break
        else:
            i = [item, 1]
            p_set.append(i)

    pro_list = []
    size = len(x)
    for item in p_set:
        pro_list.append(item[1]/size)

    ent = 0.0
    for p in pro_list:
        logp = np.log2(p)
        ent -= p * logp

    return ent


# 计算某个属性的信息增益
def cal_ent_attr(Xtrain, Ytrain):
    # print('sharp', Xtrain.shape)
    # 对每个属性
    min_ent = 100
    min_i = 0
    min_mean = 0

    for i in range(Xtrain.shape[1]):
        x_value_list = set([Xtrain[j][i] for j in range(Xtrain.shape[0])])
        mean = sum(x_value_list)/len(x_value_list)
        sum_ent = 0
        # 二叉树
        p = Ytrain[Xtrain[:, i] > mean]
        p0 = len(p)/Ytrain.shape[0]
        sum_ent = sum_ent + calc_ent(p)*p0
        p = Ytrain[Xtrain[:, i] <= mean]
        sum_ent = sum_ent + calc_ent(p)*(1-p0)

        if sum_ent <= min_ent:
            min_ent = sum_ent
            min_i = i
            min_mean = mean
    return min_i, min_mean, min_ent


def cal_max_ent_attr_c45(Xtrain, Ytrain):
    max_ent = 0
    max_mean = 0
    h = calc_ent(Ytrain)
    p = 0
    for k in range(0, len(Xtrain) - 1, 3):
        left = Xtrain[:k + 1]
        right = Xtrain[k + 1:]

        left_ent = calc_ent(Ytrain[:k+1])*len(left)/len(Ytrain)
        right_ent = calc_ent(Ytrain[k + 1:])*len(right)/len(Ytrain)
        iv = -len(left) / len(Ytrain) * np.log2(len(left) / len(Ytrain))
        iv -= len(right) / len(Ytrain) * np.log2(len(right) / len(Ytrain))

        gain_ent = (h - left_ent - right_ent)/iv

        if gain_ent > max_ent:
            max_ent = gain_ent
            max_mean = left[-1]
    return  max_ent, max_mean

# 计算某个属性的信息增益率
def cal_ent_attr_c45(Xtrain, Ytrain):
    # 对每个属性
    max_ent = 0
    max_i = 0
    max_mean = 0
    for i in range(Xtrain.shape[1]): #每个属性
        argsort = Xtrain[:,i].argsort()
        x,y = Xtrain[:,i][argsort], Ytrain[argsort]

        gain_ent, mean = cal_max_ent_attr_c45(x, y)

        if gain_ent > max_ent:
            max_ent = gain_ent
            max_i = i
            max_mean = mean
    return max_i, max_mean, max_ent

# 计算某个属性的基尼指数
def cal_gini_attr(Xtrain, Ytrain):
    # print('sharp', Xtrain.shape)

    # 对每个属性
    min_ent = 100
    min_i = 0
    min_mean = 0
    for i in range(Xtrain.shape[1]):
        x_value_list = set([Xtrain[j][i] for j in range(Xtrain.shape[0])])
        mean = sum(x_value_list)/len(x_value_list)
        sum_ent = 0
        # 二叉树
        p = Ytrain[Xtrain[:, i] > mean]
        sum_ent = sum_ent + cal_gini(p)*len(p)/len(Ytrain)
        p = Ytrain[Xtrain[:, i] <= mean]
        sum_ent = sum_ent + cal_gini(p)*len(p)/len(Ytrain)

        if sum_ent < min_ent:
            min_ent = sum_ent
            min_i = i
            min_mean = mean
    return min_i, min_mean, min_ent


def is_end(Ytrain):
    if len(Ytrain) == 0:
        return True
    if len(set(Ytrain)) == 1: # 只有一个分类
        return True

# 强行划分为叶子节点
def leaf_node(Ytrain):
    p_set = []
    k = 0
    for item in Ytrain:
        for i in p_set:
            if i[0] == item:
                i[1] = i[1] + 1
                break
        else:
            i = [item, 1]
            p_set.append(i)
        k = k + 1

    max_item = [0, 0]
    for item in p_set:
        if item[1] > max_item[1]:
            max_item = item
    # print('这个是叶子节点，value:', max_item[0])
    return TreeNode(-1, 0, 0, True, max_item[0], len(Ytrain), distrib(Ytrain))


def distrib(Ytrain):
    x_value_list = set([Ytrain[i] for i in range(Ytrain.shape[0])])
    ent = 0.0
    d_list = np.zeros(3, dtype=int)
    for x_value in x_value_list:
        d_list[x_value] = len([1 for i in Ytrain == x_value if i])

    return d_list


def print_width(nodes, depth, _feature_name, _class_names):
    if len(nodes) == 0:
        return

    print("--第", depth, "层--")
    node_down = []
    for node in nodes:
        print(node.export(_feature_name, _class_names))
        if node.left is not None:
            node_down.append(node.left)
        if node.right is not None:
            node_down.append(node.right)


    print_width(node_down, depth+1, _feature_name, _class_names)


def predit_one(X, Y, node):
    if node.is_leaf:
        # print(class_names[node.y], class_names[Y])
        # if node.y == 0:
        #     return -1
        return node.y
    else:
        if X[node.idx] <= node.idx_value:
            return predit_one(X,Y,node.left)
        else:
            return predit_one(X, Y, node.right)


class MyDT(object):

    criterion = None
    max_depth = None

    root_node = None

    def __init__(self, criterion, max_depth, max_features=1):
        self.criterion = criterion
        self.max_depth = max_depth

    def fit(self, Xtrain, Ytrain, sample_weight=None):
        if sample_weight is not None:
            indices = [i for i in np.random.choice(Xtrain.shape[0], Ytrain.shape[0], p=sample_weight)]
            Xtrain = Xtrain[indices]
            Ytrain = Ytrain[indices]

        self.root_node = self.do_fit(Xtrain, Ytrain, 0)

    def do_fit(self, Xtrain, Ytrain, depth):

        if is_end(Ytrain):
            # print('这个是叶子节点')
            return leaf_node(Ytrain)

        if depth >= self.max_depth:
            return leaf_node(Ytrain)

        if self.criterion == 'entropy':
            i, mean, min_ent = cal_ent_attr(Xtrain, Ytrain)
        elif self.criterion == 'C4.5':
            i, mean, min_ent = cal_ent_attr_c45(Xtrain, Ytrain)
        else:
            i, mean, min_ent = cal_gini_attr(Xtrain, Ytrain)
        total_ent = 0  # calc_ent(Ytrain)
        # print("第", i, "个属性,mean:", mean)
        # 生成节点
        parent_node = TreeNode(i, mean, total_ent - min_ent, False, None, len(Ytrain), distrib(Ytrain))

        # 切分数据
        right_position = Xtrain[:, i] > mean
        right_Ytrain = Ytrain[right_position]
        right_Xtrain = Xtrain[right_position]
        # right_Xtrain = np.delete(right_Xtrain, i, axis=1) # 这个属性还可以再被切分

        right_node = self.do_fit(right_Xtrain, right_Ytrain, depth + 1)

        left_position = Xtrain[:, i] <= mean
        left_Ytrain = Ytrain[left_position]
        left_Xtrain = Xtrain[left_position]
        # left_Xtrain = np.delete(left_Xtrain, i, axis=1)
        left_node = self.do_fit(left_Xtrain, left_Ytrain, depth + 1)

        parent_node.left = left_node
        parent_node.right = right_node
        return parent_node

    def predict(self, Xtest):
        result = []
        for i in range(Xtest.shape[0]):
            result.append(predit_one(Xtest[i], None, self.root_node))
        return np.array(result)

    def score(self, Xtest, Ytest):
        result = self.predict(Xtest)
        return sum(result == Ytest)/Ytest.shape[0]

    @staticmethod
    def export(tree, feature_names, class_names):
        nodes = tree.root_node
        print_width([nodes], 1, feature_names, class_names)


def read_data_1():
    wine = load_breast_cancer()
    Xtrain, Xtest, Ytrain, Ytest = train_test_split(wine.data,wine.target,test_size=0.3)
    for i in range(len(Ytrain)):
        if Ytrain[i] == 0:
            Ytrain[i] = -1
    for i in range(len(Ytest)):
        if Ytest[i] == 0:
            Ytest[i] = -1
    return Xtrain, Xtest, Ytrain, Ytest


if __name__ == '__main__':
    Xtrain, Xtest, Ytrain, Ytest = read_data_1()
    print(calc_ent1(Ytrain))

    weights = np.ones(len(Ytrain))/Ytrain.shape[0]
    print("熵值", calc_ent(Ytrain))
    print("熵值", calc_ent(Ytrain))

    print("基尼指数", cal_gini(Ytrain))

    print("信息增益率", cal_ent_attr_c45(Xtrain, Ytrain))

    clf = MyDT(criterion="C4.5", max_depth=1,)
    clf.fit(Xtrain, Ytrain, weights)

    # print_width([node], 1)

    print(clf.predict(Xtest))

    print("测试集", clf.score(Xtest, Ytest))
    print("训练集", clf.score(Xtrain, Ytrain))
    MyDT.export(clf, feature_name, class_names)